通过conda安装纯净环境的CellTypist

发布于 2022-02-22  133 次阅读


  • conda create -n celltypist -c conda-forge r-base=4.1.2
  • conda activate celltypist
  • conda install -c conda-forge r-seurat=4.1.0 -y
  • conda install -c conda-forge r-irkernel=1.3 -y
  • IRkernel::installspec(name='celltypist', displayname='r-celltypist')
  • conda install -c conda-forge scanpy=1.8.2 -y
  • /opt/conda/envs/celltypist/bin/pip3 install celltypist -i https://pypi.tuna.tsinghua.edu.cn/simple
  • conda install -c conda-forge r-reticulate=1.24 -y
  • python3
  • import celltypist
  • celltypist.models.download_models(force_update = False)


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